Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HNJHGCPN_37 | 12934 | 14907 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HNJHGCPN_37 | 12982 | 14907 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HNJHGCPN_41 | 12634 | 13584 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| HNJHGCPN_41 | 12634 | 13584 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| HNJHGCPN_41 | 12634 | 13584 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| HNJHGCPN_41 | 12634 | 13584 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HNJHGCPN_37 | 12982 | 14904 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HNJHGCPN_41 | 12633 | 13586 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HNJHGCPN_30 | 30233 | 28653 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNJHGCPN_1 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_2 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_3 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_4 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_5 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_7 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_8 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_9 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_10 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_11 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_12 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_13 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_14 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_15 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_16 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_17 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_18 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_19 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_20 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_21 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_22 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_23 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_24 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_25 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_26 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_27 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_28 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_29 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_30 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_31 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_32 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_33 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_34 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_35 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_36 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_37 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_38 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_39 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_40 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_41 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_42 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_43 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_44 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_45 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_46 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_47 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_48 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_49 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_50 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_51 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_52 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_53 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_54 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_55 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_56 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_57 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_58 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_59 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_60 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_61 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_62 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_63 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_64 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_66 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_67 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_68 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_69 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_70 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_71 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_72 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_73 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_74 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_75 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_76 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_77 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_78 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_79 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_80 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_81 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_82 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_83 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_86 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_87 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_88 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_89 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_90 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_91 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_92 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_93 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_94 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_95 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_96 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_97 | 0.0 | 1.0 | 0.0 |
| HNJHGCPN_98 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_100 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_101 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_102 | 1.0 | 0.0 | 1.0 |
| HNJHGCPN_103 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNJHGCPN_56 | 65514 | 75965 | False | Unknown | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)