Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HFKCCIPJ_27 | 12934 | 14907 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HFKCCIPJ_27 | 12982 | 14907 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HFKCCIPJ_30 | 12634 | 13584 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| HFKCCIPJ_30 | 12634 | 13584 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| HFKCCIPJ_30 | 12634 | 13584 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| HFKCCIPJ_30 | 12634 | 13584 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HFKCCIPJ_27 | 12982 | 14904 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HFKCCIPJ_30 | 12633 | 13586 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFKCCIPJ_20 | 22516 | 20936 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HFKCCIPJ_1 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_2 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_3 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_4 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_5 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_6 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_7 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_8 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_9 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_10 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_11 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_12 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_13 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_14 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_15 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_16 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_17 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_18 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_19 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_20 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_21 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_22 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_23 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_24 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_25 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_26 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_27 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_28 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_29 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_30 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_31 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_32 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_33 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_34 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_35 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_36 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_37 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_38 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_39 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_40 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_41 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_42 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_43 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_44 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_45 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_46 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_47 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_48 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_49 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_50 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_51 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_52 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_53 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_54 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_55 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_56 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_57 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_59 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_60 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_61 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_62 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_63 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_64 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_65 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_66 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_67 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_68 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_69 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_70 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_71 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_73 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_74 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_75 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_76 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_77 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_78 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_79 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_80 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_81 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_82 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_84 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_85 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_86 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_87 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_88 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_89 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_90 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_91 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_92 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_93 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_94 | 0.0 | 1.0 | 0.0 |
| HFKCCIPJ_95 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_96 | 1.0 | 0.0 | 1.0 |
| HFKCCIPJ_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HFKCCIPJ_22 | 65391 | 75842 | False | Unknown | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)