Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOPINJDC_53 | 2459 | 3742 | tet(Q) | ARO:3000191 | tet(Q) | 96.03 | 65.14 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KOPINJDC_53 | 2388 | 3744 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.48 | 70.46 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOPINJDC_53 | 2390 | 3742 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.11 | 70.36 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KOPINJDC_25 | 12429 | 10849 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KOPINJDC_1 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_2 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_3 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_4 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_5 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_6 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_7 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_8 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_9 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_10 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_11 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_12 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_13 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_14 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_15 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_16 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_17 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_18 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_19 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_20 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_21 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_22 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_23 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_24 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_25 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_26 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_27 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_28 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_29 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_30 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_31 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_32 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_33 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_34 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_35 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_36 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_37 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_38 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_39 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_40 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_41 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_42 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_43 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_44 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_45 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_47 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_48 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_49 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_50 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_51 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_52 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_53 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_54 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_55 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_56 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_57 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_58 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_60 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_61 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_62 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_63 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_64 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_65 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_66 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_67 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_68 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_69 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_70 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_71 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_72 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_73 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_74 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_75 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_76 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_77 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_78 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_79 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_80 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_81 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_82 | 0.0 | 1.0 | 0.0 |
| KOPINJDC_83 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_84 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_85 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_86 | 1.0 | 0.0 | 1.0 |
| KOPINJDC_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KOPINJDC_2 | 127813 | 134387 | False | Unknown | VOG0158, |
| KOPINJDC_8 | 84494 | 91340 | False | Siphoviridae | VOG4618, |
| KOPINJDC_22 | 89528 | 100239 | False | Unknown | VOG5821, |
| KOPINJDC_87 | 6214 | 20698 | False | Myoviridae | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)