Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFINNGNM_209 | 60161 | 62086 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PFINNGNM_209 | 60161 | 62086 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PFINNGNM_159 | 119 | 1069 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| PFINNGNM_159 | 119 | 1069 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| PFINNGNM_159 | 119 | 1069 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| PFINNGNM_159 | 119 | 1069 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFINNGNM_209 | 60164 | 62086 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PFINNGNM_159 | 117 | 1070 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PFINNGNM_204 | 12662 | 11082 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PFINNGNM_1 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_2 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_3 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_4 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_5 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_6 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_7 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_8 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_9 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_10 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_11 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_12 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_13 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_14 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_15 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_16 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_17 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_18 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_19 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_20 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_21 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_22 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_23 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_24 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_25 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_26 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_27 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_28 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_29 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_30 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_31 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_32 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_33 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_34 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_35 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_36 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_37 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_38 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_39 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_40 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_41 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_42 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_43 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_44 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_45 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_46 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_47 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_48 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_49 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_50 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_51 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_52 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_53 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_54 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_55 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_56 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_58 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_59 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_60 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_61 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_62 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_63 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_64 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_65 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_66 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_67 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_68 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_69 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_70 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_71 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_72 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_73 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_74 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_75 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_76 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_77 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_78 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_79 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_80 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_81 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_82 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_83 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_84 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_85 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_86 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_87 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_88 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_89 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_90 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_91 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_92 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_94 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_95 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_96 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_97 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_98 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_99 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_100 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_101 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_102 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_103 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_104 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_105 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_106 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_107 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_108 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_109 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_110 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_111 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_112 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_113 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_114 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_115 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_116 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_117 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_118 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_120 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_122 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_123 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_125 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_126 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_127 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_129 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_131 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_132 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_133 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_134 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_135 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_136 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_137 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_138 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_139 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_140 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_141 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_142 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_143 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_144 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_145 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_146 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_147 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_148 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_149 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_150 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_151 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_152 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_153 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_154 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_155 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_156 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_157 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_158 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_159 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_160 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_161 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_162 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_163 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_164 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_165 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_166 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_167 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_168 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_169 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_170 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_171 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_172 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_173 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_174 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_175 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_176 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_177 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_178 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_179 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_180 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_181 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_182 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_183 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_184 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_185 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_186 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_187 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_188 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_189 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_190 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_191 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_192 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_193 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_194 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_195 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_196 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_197 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_198 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_199 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_200 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_201 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_202 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_203 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_204 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_205 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_206 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_207 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_208 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_209 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_210 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_211 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_212 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_213 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_214 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_215 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_216 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_217 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_218 | 0.0 | 1.0 | 0.0 |
| PFINNGNM_219 | 1.0 | 0.0 | 1.0 |
| PFINNGNM_220 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PFINNGNM_109 | 44461 | 46313 | False | Unknown | VOG7683, |
| PFINNGNM_137 | 38326 | 49821 | False | Siphoviridae | VOG2211, |
Phigaro v2.4.0 (Database: Jan. 2024 release)