Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BNNEMICL_29 | 64819 | 66744 | tet(Q) | ARO:3000191 | tet(Q) | 97.35 | 97.56 | Z21523.1 |
| BNNEMICL_114 | 3868 | 4662 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
| BNNEMICL_114 | 1974 | 2516 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| BNNEMICL_114 | 1069 | 1977 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| BNNEMICL_30 | 1 | 885 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 91.59 | AY769934.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BNNEMICL_114 | 1069 | 1977 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| BNNEMICL_114 | 3868 | 4662 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| BNNEMICL_30 | 1 | 885 | cfxA5 | Unknown Beta-lactam | 100.00 | 91.61 | AY769934 |
| BNNEMICL_29 | 64819 | 66744 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.04 | 100.00 | L33696 |
| BNNEMICL_37 | 87592 | 88809 | mef(A) | Erythromycin, Azithromycin | 95.16 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BNNEMICL_114 | 1069 | 1974 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| BNNEMICL_114 | 3868 | 4659 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| BNNEMICL_114 | 1974 | 2513 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| BNNEMICL_30 | 1 | 882 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | BLASTX | 100.00 | 91.59 | WP_032946415.1 |
| BNNEMICL_37 | 87592 | 88806 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
| BNNEMICL_29 | 64822 | 66744 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.35 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BNNEMICL_124 | 74842 | 73262 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.72 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BNNEMICL_9 | 1242 | 1921 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BNNEMICL_1 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_2 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_3 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_4 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_5 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_6 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_7 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_8 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_9 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_10 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_11 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_12 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_13 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_14 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_15 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_17 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_18 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_19 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_20 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_21 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_22 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_23 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_24 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_25 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_26 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_27 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_28 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_29 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_30 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_31 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_32 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_33 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_34 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_35 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_36 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_37 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_38 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_39 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_40 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_41 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_42 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_43 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_44 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_45 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_46 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_47 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_48 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_49 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_50 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_51 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_52 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_53 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_54 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_55 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_56 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_57 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_58 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_59 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_60 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_61 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_62 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_63 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_64 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_65 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_66 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_67 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_68 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_69 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_70 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_71 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_72 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_73 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_74 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_75 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_76 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_77 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_78 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_79 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_80 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_81 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_82 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_83 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_84 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_85 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_86 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_87 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_88 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_89 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_90 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_91 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_92 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_93 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_94 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_95 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_96 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_97 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_98 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_99 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_100 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_101 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_102 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_103 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_104 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_105 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_106 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_107 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_108 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_109 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_110 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_111 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_112 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_113 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_114 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_115 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_116 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_117 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_118 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_119 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_120 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_121 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_122 | 1.0 | 0.0 | 1.0 |
| BNNEMICL_123 | 0.0 | 1.0 | 0.0 |
| BNNEMICL_124 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BNNEMICL_53 | 7371 | 19934 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)