Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BECPPJMM_8 | 66998 | 68944 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| BECPPJMM_84 | 1081 | 1905 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| BECPPJMM_84 | 78 | 878 | ErmF | ARO:3000498 | ErmF | 98.12 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BECPPJMM_84 | 1081 | 1905 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| BECPPJMM_84 | 78 | 878 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.38 | 100.00 | M17808 |
| BECPPJMM_8 | 66998 | 68910 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BECPPJMM_84 | 1084 | 1905 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| BECPPJMM_84 | 78 | 875 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.50 | 100.00 | WP_002682030.1 |
| BECPPJMM_8 | 66998 | 68911 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BECPPJMM_21 | 2027 | 3607 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BECPPJMM_76 | 935 | 1515 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BECPPJMM_1 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_2 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_3 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_4 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_5 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_6 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_7 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_8 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_9 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_10 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_11 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_12 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_13 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_14 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_15 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_16 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_17 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_18 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_19 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_20 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_21 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_22 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_23 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_24 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_25 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_26 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_27 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_28 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_29 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_30 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_31 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_32 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_33 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_34 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_35 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_36 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_37 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_38 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_39 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_40 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_41 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_42 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_43 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_44 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_45 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_46 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_47 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_48 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_49 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_50 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_51 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_52 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_53 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_54 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_55 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_56 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_57 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_58 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_59 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_60 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_61 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_62 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_63 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_64 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_65 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_66 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_67 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_68 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_70 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_71 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_72 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_73 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_74 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_75 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_76 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_77 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_78 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_79 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_80 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_81 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_82 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_83 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_84 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_85 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_86 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_87 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_88 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_89 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_90 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_91 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_92 | 1.0 | 0.0 | 1.0 |
| BECPPJMM_93 | 0.0 | 1.0 | 0.0 |
| BECPPJMM_94 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BECPPJMM_44 | 59354 | 69460 | False | Siphoviridae | VOG3691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)