Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNBAPDKD_10 | 64801 | 66775 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DNBAPDKD_10 | 64849 | 66774 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNBAPDKD_10 | 64849 | 66771 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DNBAPDKD_44 | 209823 | 211403 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DNBAPDKD_34 | 621 | 1300 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DNBAPDKD_1 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_2 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_3 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_4 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_5 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_6 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_7 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_8 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_9 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_10 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_11 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_12 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_13 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_14 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_15 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_16 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_17 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_18 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_19 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_20 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_21 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_22 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_23 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_24 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_25 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_26 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_27 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_28 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_29 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_30 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_31 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_32 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_33 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_34 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_35 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_37 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_38 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_39 | 1.0 | 0.0 | 1.0 |
| DNBAPDKD_41 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_42 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_43 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_44 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_45 | 0.0 | 1.0 | 0.0 |
| DNBAPDKD_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DNBAPDKD_6 | 75869 | 97221 | False | Bicaudaviridae | VOG9190, |
| DNBAPDKD_11 | 450048 | 475509 | False | Siphoviridae | VOG4675, |
| DNBAPDKD_22 | 239470 | 249881 | False | Siphoviridae | VOG3691, |
| DNBAPDKD_46 | 188355 | 198176 | False | Unknown | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)