Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOEHHKOP_88 | 58637 | 60562 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| IOEHHKOP_6 | 13761 | 14729 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.31 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IOEHHKOP_88 | 58637 | 60562 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| IOEHHKOP_6 | 13761 | 14729 | cfxA3 | Ampicillin | 99.59 | 100.00 | AF472622 |
| IOEHHKOP_6 | 13761 | 14729 | cfxA4 | Unknown Beta-lactam | 99.59 | 100.00 | AY769933 |
| IOEHHKOP_6 | 13761 | 14729 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| IOEHHKOP_6 | 13761 | 14729 | cfxA | Cefoxitin, Ampicillin | 99.59 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOEHHKOP_6 | 13761 | 14726 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| IOEHHKOP_88 | 58640 | 60562 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IOEHHKOP_77 | 63355 | 61775 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IOEHHKOP_75 | 2197 | 2777 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IOEHHKOP_1 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_2 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_3 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_4 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_5 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_6 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_7 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_8 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_9 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_10 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_11 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_12 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_13 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_14 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_15 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_16 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_17 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_18 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_19 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_20 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_21 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_22 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_23 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_24 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_25 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_26 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_27 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_28 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_29 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_30 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_31 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_32 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_33 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_34 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_35 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_36 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_37 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_38 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_39 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_40 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_41 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_42 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_43 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_44 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_45 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_46 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_47 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_48 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_49 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_50 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_51 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_52 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_53 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_54 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_55 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_56 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_57 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_58 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_59 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_60 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_61 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_62 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_63 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_65 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_66 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_67 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_68 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_69 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_70 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_71 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_72 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_73 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_74 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_75 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_76 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_77 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_78 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_79 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_80 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_81 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_83 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_85 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_86 | 1.0 | 0.0 | 1.0 |
| IOEHHKOP_87 | 0.0 | 1.0 | 0.0 |
| IOEHHKOP_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IOEHHKOP_5 | 28457 | 43170 | False | Unknown | VOG4572, |
| IOEHHKOP_31 | 8711 | 20789 | False | Siphoviridae | VOG9667, |
Phigaro v2.4.0 (Database: Jan. 2024 release)