Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGJHOMJP_32 | 62462 | 64387 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGJHOMJP_32 | 62462 | 64387 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGJHOMJP_32 | 62462 | 64384 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGJHOMJP_71 | 73510 | 75090 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGJHOMJP_1 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_2 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_3 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_4 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_5 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_6 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_7 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_8 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_9 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_10 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_11 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_12 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_13 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_14 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_15 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_16 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_17 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_18 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_19 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_20 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_21 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_22 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_23 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_24 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_25 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_26 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_27 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_28 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_29 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_30 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_31 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_32 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_33 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_34 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_35 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_36 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_37 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_38 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_39 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_40 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_41 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_42 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_43 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_44 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_45 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_46 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_47 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_48 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_49 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_50 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_51 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_52 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_53 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_54 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_55 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_56 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_57 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_58 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_59 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_60 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_61 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_62 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_63 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_64 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_65 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_66 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_67 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_68 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_69 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_70 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_71 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_72 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_73 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_74 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_75 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_76 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_77 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_78 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_81 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_82 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_83 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_84 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_85 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_86 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_87 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_88 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_89 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_90 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_91 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_92 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_93 | 0.0 | 1.0 | 0.0 |
| NGJHOMJP_94 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_95 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_96 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_97 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_98 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_99 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_100 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_101 | 1.0 | 0.0 | 1.0 |
| NGJHOMJP_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGJHOMJP_15 | 1706 | 16044 | False | Myoviridae | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)