Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJGGDCMK_2 | 19640 | 21565 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJGGDCMK_2 | 19640 | 21565 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJGGDCMK_2 | 19640 | 21562 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GJGGDCMK_14 | 2003 | 3583 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GJGGDCMK_75 | 340 | 1019 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJGGDCMK_1 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_2 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_3 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_4 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_5 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_6 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_7 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_8 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_9 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_10 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_11 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_12 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_13 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_14 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_15 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_16 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_17 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_18 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_19 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_20 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_21 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_22 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_23 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_24 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_25 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_26 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_27 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_28 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_29 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_30 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_31 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_32 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_33 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_34 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_35 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_36 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_37 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_38 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_39 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_40 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_41 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_42 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_43 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_44 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_45 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_46 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_47 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_48 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_49 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_50 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_51 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_52 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_53 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_54 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_55 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_56 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_57 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_58 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_59 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_60 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_61 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_62 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_63 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_64 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_65 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_66 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_68 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_69 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_70 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_71 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_72 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_73 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_74 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_75 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_76 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_77 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_79 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_80 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_81 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_82 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_83 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_84 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_85 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_86 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_87 | 0.0 | 1.0 | 0.0 |
| GJGGDCMK_88 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_89 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_90 | 1.0 | 0.0 | 1.0 |
| GJGGDCMK_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)