Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FLBCOMME_33 | 280590 | 281555 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| FLBCOMME_15 | 142 | 2067 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FLBCOMME_33 | 280590 | 281555 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| FLBCOMME_15 | 142 | 2067 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FLBCOMME_33 | 280593 | 281555 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| FLBCOMME_15 | 145 | 2067 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FLBCOMME_14 | 2037 | 3617 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FLBCOMME_35 | 1 | 507 | repUS2 | 508 / 681 | 98.23 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FLBCOMME_1 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_2 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_3 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_4 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_5 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_6 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_7 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_8 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_9 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_10 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_11 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_12 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_13 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_14 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_15 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_16 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_17 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_18 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_19 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_20 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_21 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_22 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_23 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_24 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_25 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_26 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_27 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_28 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_29 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_31 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_32 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_33 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_34 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_35 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_36 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_37 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_38 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_39 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_40 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_41 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_42 | 1.0 | 0.0 | 1.0 |
| FLBCOMME_43 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_44 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_45 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_46 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_47 | 0.0 | 1.0 | 0.0 |
| FLBCOMME_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)