Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGODADEJ_43 | 197498 | 199423 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| DGODADEJ_38 | 14218 | 15183 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DGODADEJ_38 | 14218 | 15183 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| DGODADEJ_43 | 197498 | 199423 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGODADEJ_38 | 14218 | 15180 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| DGODADEJ_43 | 197498 | 199420 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DGODADEJ_22 | 421267 | 422847 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DGODADEJ_30 | 93 | 772 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DGODADEJ_1 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_2 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_3 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_4 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_5 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_6 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_7 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_8 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_9 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_10 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_11 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_12 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_13 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_14 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_15 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_16 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_17 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_18 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_19 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_20 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_21 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_22 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_23 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_24 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_25 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_26 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_27 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_28 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_30 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_32 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_33 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_34 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_35 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_36 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_37 | 1.0 | 0.0 | 1.0 |
| DGODADEJ_38 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_39 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_40 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_41 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_42 | 0.0 | 1.0 | 0.0 |
| DGODADEJ_43 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)