Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCJBKAIL_25 | 250391 | 251596 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| PCJBKAIL_23 | 197288 | 198253 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| PCJBKAIL_21 | 174864 | 175598 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| PCJBKAIL_2 | 11931 | 12821 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| PCJBKAIL_2 | 10071 | 10961 | CblA-1 | ARO:3002999 | CblA-1 | 97.97 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCJBKAIL_23 | 197288 | 198253 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| PCJBKAIL_21 | 174864 | 175598 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCJBKAIL_23 | 197288 | 198250 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| PCJBKAIL_25 | 249857 | 250366 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PCJBKAIL_21 | 174864 | 175595 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| PCJBKAIL_25 | 250394 | 251596 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| PCJBKAIL_2 | 11934 | 12821 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| PCJBKAIL_2 | 10074 | 10961 | cblA | CblA family class A beta-lactamase | BLASTX | 97.97 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCJBKAIL_1 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_2 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_3 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_4 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_5 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_6 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_7 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_8 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_9 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_10 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_11 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_12 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_13 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_14 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_15 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_16 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_17 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_18 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_19 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_20 | 1.0 | 0.0 | 1.0 |
| PCJBKAIL_21 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_22 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_23 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_24 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_25 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_26 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_27 | 0.0 | 1.0 | 0.0 |
| PCJBKAIL_28 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCJBKAIL_21 | 427366 | 434594 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)