Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMNGCPBO_22 | 272852 | 273586 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| PMNGCPBO_28 | 250712 | 251917 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| PMNGCPBO_27 | 189512 | 190477 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| PMNGCPBO_2 | 11931 | 12821 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| PMNGCPBO_2 | 10071 | 10961 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMNGCPBO_27 | 189512 | 190477 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| PMNGCPBO_22 | 272852 | 273586 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMNGCPBO_27 | 189515 | 190477 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| PMNGCPBO_28 | 250178 | 250687 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PMNGCPBO_22 | 272855 | 273586 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| PMNGCPBO_28 | 250715 | 251917 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| PMNGCPBO_2 | 10074 | 10961 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| PMNGCPBO_2 | 11934 | 12821 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMNGCPBO_1 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_2 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_3 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_4 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_5 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_6 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_7 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_8 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_9 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_10 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_11 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_12 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_13 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_14 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_15 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_17 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_19 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_20 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_21 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_22 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_23 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_24 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_25 | 1.0 | 0.0 | 1.0 |
| PMNGCPBO_26 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_27 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_28 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_29 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_30 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_31 | 0.0 | 1.0 | 0.0 |
| PMNGCPBO_32 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMNGCPBO_22 | 13854 | 20379 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)