Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGPMBADG_22 | 69965 | 71890 | tet(Q) | ARO:3000191 | tet(Q) | 97.19 | 97.56 | Z21523.1 |
| NGPMBADG_58 | 9667 | 10872 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| NGPMBADG_101 | 2590 | 3480 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| NGPMBADG_77 | 138 | 1103 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGPMBADG_77 | 138 | 1103 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| NGPMBADG_77 | 138 | 1103 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| NGPMBADG_77 | 138 | 1103 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| NGPMBADG_77 | 138 | 1103 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| NGPMBADG_22 | 69965 | 71890 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.40 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGPMBADG_101 | 2593 | 3480 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| NGPMBADG_58 | 9133 | 9642 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| NGPMBADG_77 | 138 | 1100 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| NGPMBADG_58 | 9670 | 10872 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| NGPMBADG_22 | 69965 | 71887 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.19 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGPMBADG_1 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_2 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_3 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_5 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_6 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_7 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_8 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_9 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_10 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_11 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_12 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_13 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_14 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_15 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_16 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_17 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_18 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_19 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_20 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_21 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_22 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_23 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_24 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_25 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_26 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_27 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_28 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_29 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_30 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_31 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_32 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_33 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_34 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_35 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_36 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_37 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_38 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_39 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_40 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_41 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_42 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_43 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_44 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_45 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_46 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_47 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_48 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_49 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_50 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_51 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_52 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_53 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_54 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_55 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_56 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_57 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_58 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_59 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_60 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_61 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_62 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_63 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_64 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_65 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_66 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_67 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_68 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_69 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_70 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_71 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_72 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_73 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_74 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_75 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_76 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_77 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_78 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_79 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_80 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_81 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_82 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_83 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_84 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_85 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_86 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_87 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_88 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_89 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_90 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_91 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_92 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_93 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_94 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_95 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_96 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_97 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_99 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_100 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_101 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_102 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_103 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_104 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_105 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_106 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_107 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_108 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_109 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_110 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_111 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_112 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_113 | 1.0 | 0.0 | 1.0 |
| NGPMBADG_114 | 0.0 | 1.0 | 0.0 |
| NGPMBADG_116 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGPMBADG_51 | 15149 | 27439 | False | Siphoviridae | VOG4624, |
Phigaro v2.4.0 (Database: Jan. 2024 release)