Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DPJFMPLN_62 | 262019 | 262882 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| DPJFMPLN_11 | 164371 | 165261 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| DPJFMPLN_11 | 24978 | 26903 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DPJFMPLN_11 | 24978 | 26903 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| DPJFMPLN_40 | 78 | 558 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 60.05 | M14730 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DPJFMPLN_62 | 262019 | 262879 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| DPJFMPLN_11 | 164374 | 165261 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| DPJFMPLN_11 | 24981 | 26903 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| DPJFMPLN_40 | 79 | 558 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 60.15 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DPJFMPLN_1 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_2 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_3 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_4 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_5 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_6 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_7 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_8 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_9 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_10 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_11 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_12 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_13 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_14 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_15 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_16 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_17 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_18 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_19 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_20 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_21 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_22 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_23 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_24 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_25 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_26 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_27 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_28 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_29 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_30 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_31 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_32 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_33 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_34 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_35 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_36 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_37 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_38 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_39 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_40 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_41 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_42 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_43 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_44 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_45 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_46 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_48 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_49 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_50 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_51 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_52 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_53 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_54 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_55 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_56 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_57 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_58 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_59 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_60 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_61 | 1.0 | 0.0 | 1.0 |
| DPJFMPLN_62 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_63 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_64 | 0.0 | 1.0 | 0.0 |
| DPJFMPLN_65 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DPJFMPLN_11 | 338190 | 346834 | False | Unknown | VOG4548, |
| DPJFMPLN_28 | 7695 | 15571 | False | Unknown | VOG10904, |
Phigaro v2.4.0 (Database: Jan. 2024 release)