Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOCGDLAC_44 | 500797 | 501597 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| LOCGDLAC_44 | 498585 | 500510 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| LOCGDLAC_2 | 80824 | 82749 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| LOCGDLAC_16 | 34423 | 35313 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LOCGDLAC_2 | 80824 | 82749 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| LOCGDLAC_44 | 500797 | 501597 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOCGDLAC_2 | 80824 | 82746 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| LOCGDLAC_16 | 34423 | 35310 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| LOCGDLAC_44 | 500800 | 501597 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| LOCGDLAC_44 | 498588 | 500510 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LOCGDLAC_1 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_2 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_3 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_4 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_5 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_6 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_7 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_8 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_9 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_10 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_11 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_12 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_13 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_14 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_15 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_16 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_17 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_18 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_19 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_20 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_21 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_22 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_23 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_24 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_25 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_26 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_27 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_28 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_29 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_30 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_31 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_32 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_33 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_34 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_35 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_37 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_38 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_39 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_40 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_41 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_42 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_43 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_44 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_45 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_46 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_47 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_48 | 1.0 | 0.0 | 1.0 |
| LOCGDLAC_49 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_50 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_51 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_52 | 0.0 | 1.0 | 0.0 |
| LOCGDLAC_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LOCGDLAC_11 | 116984 | 124860 | False | Unknown | VOG1093, |
| LOCGDLAC_53 | 157722 | 170789 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)