Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKKGOHCJ_10 | 62821 | 64026 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GKKGOHCJ_25 | 34768 | 36742 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| GKKGOHCJ_27 | 3004 | 3894 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GKKGOHCJ_25 | 34816 | 36741 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKKGOHCJ_10 | 62287 | 62796 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GKKGOHCJ_25 | 34816 | 36738 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| GKKGOHCJ_10 | 62824 | 64026 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| GKKGOHCJ_27 | 3007 | 3894 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKKGOHCJ_1 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_2 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_3 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_4 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_5 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_6 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_7 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_8 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_9 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_10 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_11 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_12 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_13 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_14 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_15 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_16 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_17 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_18 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_19 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_20 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_21 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_22 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_23 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_24 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_25 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_26 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_27 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_28 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_29 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_30 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_31 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_32 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_33 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_34 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_35 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_36 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_37 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_38 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_39 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_40 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_41 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_42 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_43 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_44 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_45 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_46 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_47 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_48 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_49 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_50 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_51 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_52 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_54 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_55 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_56 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_57 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_58 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_59 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_60 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_61 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_62 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_63 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_64 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_65 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_66 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_67 | 1.0 | 0.0 | 1.0 |
| GKKGOHCJ_68 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_69 | 0.0 | 1.0 | 0.0 |
| GKKGOHCJ_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)