Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCPMFDMG_44 | 213886 | 214776 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| GCPMFDMG_14 | 34763 | 36737 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| GCPMFDMG_2 | 6822 | 8027 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCPMFDMG_14 | 34811 | 36736 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCPMFDMG_2 | 8052 | 8561 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GCPMFDMG_14 | 34811 | 36733 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| GCPMFDMG_2 | 6822 | 8024 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| GCPMFDMG_44 | 213889 | 214776 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCPMFDMG_1 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_2 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_3 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_4 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_5 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_6 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_7 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_8 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_9 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_10 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_11 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_12 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_13 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_14 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_15 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_16 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_17 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_18 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_19 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_20 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_21 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_22 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_23 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_24 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_25 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_26 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_27 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_28 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_29 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_30 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_31 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_33 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_34 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_35 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_36 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_38 | 1.0 | 0.0 | 1.0 |
| GCPMFDMG_39 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_40 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_41 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_42 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_43 | 0.0 | 1.0 | 0.0 |
| GCPMFDMG_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)