Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OICNDCFA_14 | 57700 | 59625 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| OICNDCFA_3 | 18787 | 19677 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OICNDCFA_14 | 57700 | 59625 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OICNDCFA_3 | 18787 | 19674 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| OICNDCFA_14 | 57700 | 59622 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OICNDCFA_1 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_2 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_3 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_4 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_5 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_6 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_7 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_8 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_9 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_10 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_11 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_12 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_13 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_14 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_15 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_16 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_17 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_18 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_19 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_20 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_21 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_22 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_23 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_24 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_25 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_26 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_27 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_28 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_29 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_30 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_31 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_32 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_33 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_34 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_36 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_37 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_38 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_39 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_40 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_41 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_42 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_43 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_44 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_45 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_46 | 1.0 | 0.0 | 1.0 |
| OICNDCFA_47 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_48 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_49 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_50 | 0.0 | 1.0 | 0.0 |
| OICNDCFA_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OICNDCFA_2 | 20826 | 25750 | False | Siphoviridae | VOG8262, |
| OICNDCFA_10 | 10891 | 22882 | False | Unknown | VOG4568, |
| OICNDCFA_48 | 185290 | 191449 | True | Siphoviridae | VOG4551, |
Phigaro v2.4.0 (Database: Jan. 2024 release)