Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEONLFOA_22 | 103589 | 104479 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| NEONLFOA_25 | 15131 | 17056 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NEONLFOA_25 | 15131 | 17056 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEONLFOA_22 | 103589 | 104476 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| NEONLFOA_25 | 15131 | 17053 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEONLFOA_1 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_2 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_3 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_4 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_5 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_6 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_7 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_8 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_9 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_10 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_11 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_12 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_13 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_14 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_15 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_16 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_17 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_18 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_19 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_20 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_21 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_22 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_23 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_24 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_25 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_26 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_27 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_28 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_29 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_30 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_31 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_32 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_33 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_34 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_35 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_36 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_37 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_38 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_40 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_41 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_42 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_43 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_44 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_45 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_47 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_48 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_49 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_50 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_51 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_52 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_53 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_54 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_55 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_56 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_57 | 1.0 | 0.0 | 1.0 |
| NEONLFOA_58 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_59 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_60 | 0.0 | 1.0 | 0.0 |
| NEONLFOA_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEONLFOA_2 | 163302 | 168226 | False | Siphoviridae | VOG7238, |
| NEONLFOA_22 | 59477 | 71468 | False | Unknown | VOG0572, |
| NEONLFOA_61 | 185291 | 191450 | True | Siphoviridae | VOG4551, |
Phigaro v2.4.0 (Database: Jan. 2024 release)