Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHEJLMJG_22 | 245042 | 246967 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PHEJLMJG_1 | 76997 | 77830 | ErmF | ARO:3000498 | ErmF | 99.62 | 104.14 | M17124.1 |
| PHEJLMJG_1 | 74891 | 75754 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| PHEJLMJG_38 | 9739 | 10629 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PHEJLMJG_1 | 76997 | 77797 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PHEJLMJG_22 | 245042 | 246967 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHEJLMJG_1 | 74891 | 75751 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| PHEJLMJG_1 | 77000 | 77797 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PHEJLMJG_22 | 245042 | 246964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PHEJLMJG_38 | 9742 | 10629 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PHEJLMJG_51 | 1697 | 2376 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHEJLMJG_1 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_2 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_3 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_4 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_5 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_6 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_7 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_8 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_9 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_10 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_11 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_12 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_13 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_14 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_15 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_16 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_17 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_18 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_19 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_20 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_21 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_22 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_23 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_24 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_25 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_26 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_27 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_28 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_29 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_30 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_31 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_32 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_33 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_34 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_35 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_36 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_37 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_38 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_39 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_40 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_41 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_42 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_43 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_44 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_46 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_47 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_48 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_49 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_50 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_51 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_52 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_53 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_54 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_55 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_56 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_57 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_58 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_59 | 1.0 | 0.0 | 1.0 |
| PHEJLMJG_60 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_61 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_62 | 0.0 | 1.0 | 0.0 |
| PHEJLMJG_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PHEJLMJG_3 | 62171 | 68514 | False | Unknown | VOG0572, |
| PHEJLMJG_6 | 38021 | 44797 | True | Siphoviridae | VOG7108, |
| PHEJLMJG_22 | 265712 | 276933 | False | Unknown | VOG3992, |
| PHEJLMJG_55 | 2571 | 11767 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)