Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMLPCONI_2 | 109551 | 110441 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| MMLPCONI_37 | 18417 | 20342 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MMLPCONI_37 | 18417 | 20342 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMLPCONI_2 | 109551 | 110438 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| MMLPCONI_37 | 18417 | 20339 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MMLPCONI_1 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_2 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_3 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_4 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_5 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_6 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_7 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_8 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_9 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_10 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_11 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_12 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_13 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_14 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_15 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_16 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_17 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_18 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_19 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_20 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_21 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_22 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_23 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_24 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_25 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_26 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_27 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_28 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_29 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_30 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_31 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_32 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_33 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_34 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_35 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_36 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_37 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_38 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_39 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_40 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_41 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_42 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_43 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_44 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_45 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_46 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_47 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_48 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_49 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_50 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_51 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_52 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_53 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_54 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_55 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_56 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_57 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_58 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_59 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_60 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_61 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_62 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_63 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_64 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_65 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_66 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_67 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_68 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_69 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_70 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_71 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_72 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_73 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_74 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_75 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_76 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_77 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_78 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_79 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_80 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_81 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_82 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_83 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_84 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_85 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_86 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_87 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_88 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_89 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_90 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_91 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_92 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_93 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_94 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_95 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_96 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_97 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_98 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_99 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_100 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_101 | 0.0 | 1.0 | 0.0 |
| MMLPCONI_103 | 1.0 | 0.0 | 1.0 |
| MMLPCONI_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MMLPCONI_82 | 32644 | 46613 | False | Unknown | VOG0796, |
Phigaro v2.4.0 (Database: Jan. 2024 release)