Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMMNGLIN_88 | 134887 | 135777 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| GMMNGLIN_25 | 44006 | 44743 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| GMMNGLIN_43 | 226 | 2151 | tet(Q) | ARO:3000191 | tet(Q) | 99.84 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GMMNGLIN_43 | 226 | 2151 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | Z21523 |
| GMMNGLIN_25 | 44006 | 44743 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMMNGLIN_43 | 226 | 2148 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_002560998.1 |
| GMMNGLIN_25 | 44009 | 44743 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| GMMNGLIN_88 | 134890 | 135777 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GMMNGLIN_71 | 339 | 1018 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMMNGLIN_1 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_2 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_3 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_4 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_5 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_6 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_7 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_8 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_9 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_10 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_11 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_12 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_13 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_14 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_15 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_16 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_17 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_18 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_19 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_20 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_21 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_22 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_23 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_24 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_25 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_26 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_27 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_28 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_29 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_30 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_31 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_32 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_33 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_34 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_35 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_36 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_37 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_38 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_39 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_40 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_41 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_42 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_43 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_44 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_45 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_46 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_47 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_48 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_49 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_50 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_51 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_52 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_53 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_54 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_55 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_56 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_57 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_58 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_59 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_60 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_61 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_62 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_63 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_64 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_65 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_66 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_67 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_68 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_69 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_70 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_71 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_72 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_73 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_75 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_76 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_77 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_78 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_79 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_80 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_81 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_82 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_83 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_84 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_85 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_86 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_87 | 1.0 | 0.0 | 1.0 |
| GMMNGLIN_88 | 0.0 | 1.0 | 0.0 |
| GMMNGLIN_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GMMNGLIN_5 | 67456 | 70394 | True | Unknown | VOG0275, |
| GMMNGLIN_28 | 31943 | 40116 | False | Siphoviridae | VOG1563, |
Phigaro v2.4.0 (Database: Jan. 2024 release)