Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DCEENCDM_7 | 98730 | 99620 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
| DCEENCDM_30 | 47908 | 49833 | tet(Q) | ARO:3000191 | tet(Q) | 99.84 | 97.56 | Z21523.1 |
| DCEENCDM_27 | 44006 | 44743 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DCEENCDM_30 | 47908 | 49833 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | Z21523 |
| DCEENCDM_27 | 44006 | 44743 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DCEENCDM_30 | 47911 | 49833 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_002560998.1 |
| DCEENCDM_27 | 44009 | 44743 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| DCEENCDM_7 | 98733 | 99620 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DCEENCDM_85 | 1 | 488 | repUS2 | 489 / 681 | 99.39 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DCEENCDM_1 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_2 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_3 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_4 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_5 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_6 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_7 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_8 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_9 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_10 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_11 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_12 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_13 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_14 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_15 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_16 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_17 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_18 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_19 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_20 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_21 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_22 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_23 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_24 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_25 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_26 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_27 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_28 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_29 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_30 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_31 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_32 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_33 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_34 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_35 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_36 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_37 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_38 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_39 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_40 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_41 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_42 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_43 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_44 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_45 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_46 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_47 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_48 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_49 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_50 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_51 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_52 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_53 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_54 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_55 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_56 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_57 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_58 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_59 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_60 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_61 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_62 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_63 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_64 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_65 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_66 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_67 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_68 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_69 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_70 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_71 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_72 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_73 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_74 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_76 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_77 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_78 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_79 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_80 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_81 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_82 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_83 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_84 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_85 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_86 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_87 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_88 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_89 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_90 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_91 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_92 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_93 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_94 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_95 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_96 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_97 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_98 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_99 | 0.0 | 1.0 | 0.0 |
| DCEENCDM_100 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_101 | 1.0 | 0.0 | 1.0 |
| DCEENCDM_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DCEENCDM_12 | 57787 | 60725 | True | Unknown | VOG0275, |
| DCEENCDM_31 | 7497 | 15670 | False | Siphoviridae | VOG1410, |
Phigaro v2.4.0 (Database: Jan. 2024 release)