Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPFMIHMB_22 | 450827 | 451792 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
| LPFMIHMB_66 | 66332 | 67222 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| LPFMIHMB_58 | 2093 | 3280 | tet(Q) | ARO:3000191 | tet(Q) | 96.21 | 60.27 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LPFMIHMB_22 | 450827 | 451792 | cfxA3 | Ampicillin | 99.38 | 100.00 | AF472622 |
| LPFMIHMB_22 | 450827 | 451792 | cfxA4 | Unknown Beta-lactam | 99.38 | 100.00 | AY769933 |
| LPFMIHMB_22 | 450827 | 451792 | cfxA5 | Unknown Beta-lactam | 99.38 | 100.00 | AY769934 |
| LPFMIHMB_22 | 450827 | 451792 | cfxA | Cefoxitin, Ampicillin | 99.38 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPFMIHMB_66 | 66332 | 67219 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| LPFMIHMB_22 | 450830 | 451792 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPFMIHMB_1 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_2 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_3 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_4 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_5 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_6 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_7 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_8 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_9 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_10 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_11 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_12 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_13 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_14 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_15 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_16 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_17 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_18 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_19 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_20 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_21 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_22 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_23 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_24 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_25 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_26 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_27 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_28 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_29 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_30 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_31 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_32 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_33 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_34 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_35 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_36 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_37 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_38 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_39 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_40 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_41 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_42 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_43 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_44 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_45 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_46 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_47 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_48 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_49 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_50 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_52 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_53 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_54 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_55 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_56 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_57 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_58 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_59 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_60 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_61 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_62 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_63 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_64 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_65 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_66 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_68 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_69 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_70 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_71 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_72 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_73 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_74 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_75 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_76 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_77 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_78 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_79 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_80 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_81 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_82 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_83 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_84 | 1.0 | 0.0 | 1.0 |
| LPFMIHMB_85 | 0.0 | 1.0 | 0.0 |
| LPFMIHMB_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPFMIHMB_17 | 69754 | 72412 | False | Unknown | VOG0292, |
| LPFMIHMB_77 | 45468 | 57459 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)