Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INNJPMJD_17 | 222858 | 223748 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| INNJPMJD_19 | 81954 | 83879 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| INNJPMJD_37 | 30005 | 31930 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| INNJPMJD_66 | 140 | 1105 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| INNJPMJD_66 | 140 | 1105 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| INNJPMJD_66 | 140 | 1105 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| INNJPMJD_66 | 140 | 1105 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| INNJPMJD_66 | 140 | 1105 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| INNJPMJD_37 | 30005 | 31930 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INNJPMJD_66 | 140 | 1102 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| INNJPMJD_17 | 222861 | 223748 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| INNJPMJD_37 | 30005 | 31927 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| INNJPMJD_19 | 81954 | 83876 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INNJPMJD_1 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_2 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_3 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_6 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_7 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_8 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_9 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_10 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_11 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_12 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_13 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_14 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_15 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_16 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_17 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_18 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_19 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_20 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_21 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_22 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_23 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_24 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_25 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_26 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_27 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_28 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_29 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_30 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_31 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_32 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_33 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_34 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_35 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_36 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_37 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_38 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_39 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_40 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_41 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_42 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_43 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_44 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_45 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_46 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_47 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_48 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_49 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_50 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_51 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_52 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_53 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_54 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_55 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_56 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_57 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_58 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_59 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_60 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_61 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_62 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_63 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_64 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_65 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_66 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_67 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_68 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_69 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_70 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_71 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_72 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_73 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_74 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_75 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_76 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_77 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_78 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_79 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_80 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_81 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_82 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_83 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_84 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_85 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_86 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_87 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_88 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_89 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_90 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_91 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_92 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_93 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_94 | 0.0 | 1.0 | 0.0 |
| INNJPMJD_95 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_96 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_97 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_98 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_99 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_100 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_101 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_102 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_103 | 1.0 | 0.0 | 1.0 |
| INNJPMJD_104 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| INNJPMJD_11 | 100571 | 116385 | False | Siphoviridae | VOG2788, |
Phigaro v2.4.0 (Database: Jan. 2024 release)