Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BOICOCGK_22 | 222858 | 223748 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| BOICOCGK_12 | 81954 | 83879 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| BOICOCGK_32 | 30005 | 31930 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| BOICOCGK_56 | 140 | 1105 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BOICOCGK_56 | 140 | 1105 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| BOICOCGK_56 | 140 | 1105 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| BOICOCGK_56 | 140 | 1105 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| BOICOCGK_56 | 140 | 1105 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| BOICOCGK_32 | 30005 | 31930 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BOICOCGK_56 | 140 | 1102 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| BOICOCGK_22 | 222861 | 223748 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| BOICOCGK_32 | 30005 | 31927 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BOICOCGK_12 | 81954 | 83876 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BOICOCGK_1 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_2 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_3 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_4 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_5 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_6 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_7 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_8 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_9 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_10 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_11 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_12 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_13 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_14 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_15 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_16 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_17 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_18 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_19 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_20 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_21 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_22 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_23 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_24 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_25 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_26 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_27 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_28 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_29 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_30 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_31 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_32 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_33 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_34 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_35 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_36 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_37 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_38 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_39 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_40 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_41 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_42 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_43 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_44 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_45 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_46 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_47 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_48 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_49 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_50 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_51 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_52 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_53 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_54 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_55 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_56 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_57 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_58 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_59 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_60 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_61 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_62 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_63 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_64 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_65 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_66 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_67 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_68 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_70 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_71 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_72 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_73 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_74 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_75 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_76 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_77 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_78 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_79 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_80 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_81 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_82 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_83 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_84 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_85 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_86 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_87 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_88 | 0.0 | 1.0 | 0.0 |
| BOICOCGK_89 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_90 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_91 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_92 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_93 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_94 | 1.0 | 0.0 | 1.0 |
| BOICOCGK_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BOICOCGK_3 | 100571 | 116862 | False | Siphoviridae | VOG2788, |
Phigaro v2.4.0 (Database: Jan. 2024 release)