Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LILHKNNI_40 | 318978 | 319868 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| LILHKNNI_41 | 302815 | 303549 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| LILHKNNI_1 | 158977 | 160951 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| LILHKNNI_44 | 103172 | 104137 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LILHKNNI_44 | 103172 | 104137 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| LILHKNNI_1 | 159025 | 160950 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LILHKNNI_41 | 302815 | 303549 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| LILHKNNI_41 | 304321 | 305784 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| LILHKNNI_41 | 305910 | 307124 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LILHKNNI_44 | 103172 | 104134 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| LILHKNNI_1 | 159025 | 160947 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LILHKNNI_40 | 318978 | 319865 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| LILHKNNI_41 | 302818 | 303549 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| LILHKNNI_41 | 304324 | 305784 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| LILHKNNI_41 | 305901 | 307124 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LILHKNNI_30 | 541 | 1121 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LILHKNNI_1 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_2 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_3 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_4 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_5 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_6 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_7 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_8 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_9 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_10 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_11 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_12 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_13 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_14 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_15 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_16 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_17 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_18 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_19 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_20 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_21 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_22 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_23 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_25 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_26 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_27 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_28 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_29 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_30 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_31 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_32 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_33 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_34 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_35 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_36 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_37 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_38 | 1.0 | 0.0 | 1.0 |
| LILHKNNI_39 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_40 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_41 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_42 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_43 | 0.0 | 1.0 | 0.0 |
| LILHKNNI_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LILHKNNI_11 | 606795 | 617670 | False | Siphoviridae | VOG0749, |
| LILHKNNI_11 | 684874 | 695195 | False | Unknown | VOG1873, |
| LILHKNNI_41 | 66114 | 77880 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)