Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLGPECKE_2 | 101961 | 103886 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LLGPECKE_61 | 66047 | 66937 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LLGPECKE_2 | 101961 | 103886 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLGPECKE_61 | 66050 | 66937 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| LLGPECKE_2 | 101964 | 103886 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLGPECKE_1 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_2 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_3 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_4 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_5 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_6 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_7 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_8 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_9 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_10 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_11 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_12 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_13 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_14 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_15 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_16 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_17 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_18 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_19 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_20 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_21 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_22 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_23 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_24 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_25 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_26 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_27 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_28 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_29 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_30 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_31 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_32 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_33 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_34 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_35 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_36 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_37 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_38 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_39 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_40 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_41 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_44 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_45 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_46 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_47 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_48 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_49 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_50 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_51 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_52 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_53 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_54 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_55 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_56 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_57 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_58 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_59 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_60 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_61 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_62 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_63 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_64 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_65 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_66 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_67 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_68 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_69 | 0.0 | 1.0 | 0.0 |
| LLGPECKE_70 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_71 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_72 | 1.0 | 0.0 | 1.0 |
| LLGPECKE_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)