Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FKDPLAHO_22 | 222289 | 223179 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| FKDPLAHO_44 | 106748 | 108673 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| FKDPLAHO_5 | 98301 | 99266 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FKDPLAHO_5 | 98301 | 99266 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| FKDPLAHO_44 | 106748 | 108673 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FKDPLAHO_22 | 222289 | 223176 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| FKDPLAHO_5 | 98301 | 99263 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| FKDPLAHO_44 | 106748 | 108670 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FKDPLAHO_1 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_2 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_3 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_4 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_5 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_6 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_7 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_8 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_9 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_10 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_11 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_12 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_13 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_14 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_15 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_16 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_17 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_18 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_19 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_20 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_21 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_22 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_23 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_24 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_25 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_26 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_27 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_28 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_30 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_31 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_32 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_33 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_34 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_35 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_36 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_37 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_38 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_39 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_40 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_41 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_42 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_43 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_44 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_45 | 1.0 | 0.0 | 1.0 |
| FKDPLAHO_46 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_47 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_48 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_49 | 0.0 | 1.0 | 0.0 |
| FKDPLAHO_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)