Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCOHLEED_22 | 121726 | 122616 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| NCOHLEED_59 | 106963 | 108888 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCOHLEED_59 | 106963 | 108888 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCOHLEED_22 | 121726 | 122613 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| NCOHLEED_59 | 106963 | 108885 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCOHLEED_1 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_2 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_3 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_4 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_5 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_6 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_7 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_8 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_9 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_10 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_11 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_12 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_13 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_14 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_15 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_16 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_17 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_18 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_19 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_20 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_21 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_22 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_23 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_24 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_25 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_26 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_27 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_28 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_29 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_30 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_31 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_32 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_33 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_34 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_35 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_36 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_37 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_38 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_40 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_41 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_42 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_43 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_44 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_45 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_46 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_47 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_48 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_49 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_50 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_51 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_52 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_53 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_54 | 1.0 | 0.0 | 1.0 |
| NCOHLEED_55 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_56 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_57 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_58 | 0.0 | 1.0 | 0.0 |
| NCOHLEED_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)