Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HEALKNHC_22 | 220580 | 221470 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| HEALKNHC_6 | 98370 | 99335 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| HEALKNHC_5 | 26042 | 27967 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HEALKNHC_6 | 98370 | 99335 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| HEALKNHC_5 | 26042 | 27967 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HEALKNHC_22 | 220580 | 221467 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| HEALKNHC_6 | 98370 | 99332 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| HEALKNHC_5 | 26042 | 27964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HEALKNHC_1 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_2 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_3 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_4 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_5 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_6 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_7 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_8 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_9 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_10 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_11 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_12 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_13 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_14 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_15 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_16 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_17 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_18 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_19 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_20 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_21 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_22 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_23 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_24 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_25 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_26 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_27 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_28 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_29 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_31 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_32 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_33 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_34 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_35 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_36 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_37 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_38 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_39 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_40 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_41 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_42 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_43 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_44 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_45 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_46 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_47 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_48 | 1.0 | 0.0 | 1.0 |
| HEALKNHC_49 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_50 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_51 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_52 | 0.0 | 1.0 | 0.0 |
| HEALKNHC_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)