Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKKOGJLP_37 | 215203 | 216093 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| GKKOGJLP_10 | 22769 | 23974 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GKKOGJLP_2 | 11045 | 12970 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| GKKOGJLP_13 | 6241 | 7407 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GKKOGJLP_2 | 11045 | 12970 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| GKKOGJLP_13 | 6241 | 7407 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| GKKOGJLP_13 | 5227 | 6028 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKKOGJLP_10 | 23999 | 24508 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GKKOGJLP_2 | 11048 | 12970 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| GKKOGJLP_13 | 5336 | 6025 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | PARTIALX | 100.00 | 86.47 | WP_002682030.1 |
| GKKOGJLP_13 | 6244 | 7407 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| GKKOGJLP_37 | 215206 | 216093 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| GKKOGJLP_10 | 22769 | 23971 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKKOGJLP_1 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_2 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_3 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_4 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_5 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_6 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_7 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_8 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_9 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_10 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_11 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_12 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_13 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_14 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_15 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_16 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_17 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_18 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_20 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_21 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_22 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_23 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_24 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_25 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_26 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_27 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_28 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_30 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_31 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_32 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_33 | 1.0 | 0.0 | 1.0 |
| GKKOGJLP_34 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_35 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_36 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_37 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_38 | 0.0 | 1.0 | 0.0 |
| GKKOGJLP_39 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKKOGJLP_9 | 26017 | 31121 | False | Unknown | VOG1356, |
| GKKOGJLP_11 | 387037 | 400160 | False | Unknown | VOG0083, |
| GKKOGJLP_22 | 450615 | 462381 | False | Unknown | VOG4690, |
| GKKOGJLP_34 | 43381 | 55091 | False | Siphoviridae | VOG0749, |
| GKKOGJLP_35 | 317722 | 331021 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)