Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNLODAGD_22 | 220628 | 221518 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| JNLODAGD_5 | 25824 | 27749 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JNLODAGD_5 | 25824 | 27749 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNLODAGD_22 | 220628 | 221515 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| JNLODAGD_5 | 25824 | 27746 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNLODAGD_1 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_2 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_3 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_4 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_5 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_6 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_7 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_8 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_9 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_10 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_11 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_12 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_13 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_14 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_15 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_16 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_17 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_18 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_19 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_20 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_21 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_22 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_23 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_24 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_25 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_26 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_27 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_28 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_29 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_30 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_31 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_32 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_33 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_34 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_35 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_37 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_39 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_41 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_42 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_43 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_44 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_45 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_46 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_47 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_48 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_49 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_50 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_51 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_52 | 1.0 | 0.0 | 1.0 |
| JNLODAGD_53 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_54 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_55 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_56 | 0.0 | 1.0 | 0.0 |
| JNLODAGD_57 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)