Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMOHCABM_22 | 369685 | 371610 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NMOHCABM_55 | 182874 | 183839 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| NMOHCABM_4 | 115204 | 115938 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| NMOHCABM_2 | 9893 | 10783 | CblA-1 | ARO:3002999 | CblA-1 | 98.99 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NMOHCABM_55 | 182874 | 183839 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| NMOHCABM_22 | 369685 | 371610 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NMOHCABM_4 | 115204 | 115938 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| NMOHCABM_44 | 427732 | 429195 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| NMOHCABM_44 | 426392 | 427606 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMOHCABM_55 | 182874 | 183836 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| NMOHCABM_4 | 115207 | 115938 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| NMOHCABM_22 | 369685 | 371607 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NMOHCABM_2 | 9896 | 10783 | cblA | CblA family class A beta-lactamase | BLASTX | 98.99 | 100.00 | WP_005827792.1 |
| NMOHCABM_44 | 427732 | 429192 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| NMOHCABM_44 | 426392 | 427615 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NMOHCABM_34 | 628 | 1307 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMOHCABM_1 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_2 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_3 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_4 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_5 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_6 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_7 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_8 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_9 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_10 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_11 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_12 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_13 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_14 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_15 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_16 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_17 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_18 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_19 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_20 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_21 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_22 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_23 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_24 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_25 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_26 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_27 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_28 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_29 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_30 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_31 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_32 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_33 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_34 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_35 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_36 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_37 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_38 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_39 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_40 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_41 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_43 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_44 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_45 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_46 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_47 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_48 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_49 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_50 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_51 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_52 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_53 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_54 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_55 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_56 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_57 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_58 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_59 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_60 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_61 | 1.0 | 0.0 | 1.0 |
| NMOHCABM_62 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_63 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_64 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_65 | 0.0 | 1.0 | 0.0 |
| NMOHCABM_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMOHCABM_22 | 101654 | 113419 | False | Siphoviridae | VOG0749, |
| NMOHCABM_64 | 87983 | 95859 | False | Unknown | VOG1093, |
Phigaro v2.4.0 (Database: Jan. 2024 release)