Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHLJJFIA_66 | 224754 | 225644 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| LHLJJFIA_71 | 219913 | 220713 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| LHLJJFIA_71 | 218468 | 219607 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LHLJJFIA_71 | 217133 | 218269 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| LHLJJFIA_71 | 216094 | 216957 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LHLJJFIA_56 | 112 | 2082 | tet(Q) | ARO:3000191 | tet(Q) | 96.84 | 99.85 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LHLJJFIA_56 | 112 | 2007 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 98.44 | X58717 |
| LHLJJFIA_71 | 219913 | 220713 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LHLJJFIA_71 | 217133 | 218299 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHLJJFIA_71 | 216097 | 216957 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LHLJJFIA_71 | 217136 | 218299 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| LHLJJFIA_71 | 218471 | 219607 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| LHLJJFIA_71 | 219913 | 220710 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| LHLJJFIA_56 | 115 | 2016 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 98.91 | WP_004293868.1 |
| LHLJJFIA_66 | 224757 | 225644 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LHLJJFIA_50 | 2016 | 2695 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHLJJFIA_1 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_2 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_3 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_4 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_5 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_6 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_7 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_8 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_9 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_10 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_11 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_12 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_13 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_14 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_15 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_16 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_17 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_18 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_19 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_20 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_21 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_22 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_23 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_24 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_25 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_26 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_27 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_28 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_29 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_30 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_31 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_32 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_33 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_34 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_35 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_36 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_37 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_38 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_39 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_40 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_41 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_42 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_43 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_44 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_45 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_47 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_48 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_49 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_50 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_51 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_52 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_54 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_55 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_56 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_57 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_58 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_59 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_60 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_61 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_62 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_63 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_64 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_65 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_66 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_67 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_68 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_69 | 1.0 | 0.0 | 1.0 |
| LHLJJFIA_71 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_72 | 0.0 | 1.0 | 0.0 |
| LHLJJFIA_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHLJJFIA_22 | 208508 | 218895 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)