Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HOJIMNGE_30 | 40 | 226 | Col(MG828) | 187 / 262 | 93.05 | NC008486 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOJIMNGE_1 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_2 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_3 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_4 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_5 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_6 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_7 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_8 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_9 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_10 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_11 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_12 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_13 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_14 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_15 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_16 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_17 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_18 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_19 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_20 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_21 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_22 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_23 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_24 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_26 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_27 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_28 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_29 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_30 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_31 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_32 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_33 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_34 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_35 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_36 | 1.0 | 0.0 | 1.0 |
| HOJIMNGE_37 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_38 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_39 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_40 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_41 | 0.0 | 1.0 | 0.0 |
| HOJIMNGE_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOJIMNGE_3 | 108316 | 114716 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)