Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFAFFJDO_44 | 132928 | 133662 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| AFAFFJDO_7 | 127717 | 129642 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AFAFFJDO_44 | 132928 | 133662 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| AFAFFJDO_7 | 127717 | 129642 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFAFFJDO_44 | 132931 | 133662 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| AFAFFJDO_7 | 127717 | 129639 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AFAFFJDO_34 | 298 | 977 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFAFFJDO_1 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_2 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_3 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_4 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_5 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_6 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_7 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_8 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_9 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_10 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_11 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_12 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_13 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_14 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_15 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_16 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_17 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_18 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_19 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_20 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_21 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_22 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_23 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_24 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_25 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_26 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_27 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_28 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_29 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_30 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_31 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_33 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_34 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_35 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_36 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_37 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_38 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_39 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_40 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_41 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_42 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_43 | 1.0 | 0.0 | 1.0 |
| AFAFFJDO_44 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_45 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_46 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_47 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_48 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_49 | 0.0 | 1.0 | 0.0 |
| AFAFFJDO_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFAFFJDO_11 | 66979 | 71581 | False | Unknown | VOG4544, |
| AFAFFJDO_11 | 192908 | 201402 | False | Siphoviridae | VOG0572, |
| AFAFFJDO_44 | 53393 | 82040 | False | Myoviridae | VOG4548, |
Phigaro v2.4.0 (Database: Jan. 2024 release)