Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKPIEHCK_5 | 10580 | 12505 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LKPIEHCK_146 | 8128 | 9333 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LKPIEHCK_156 | 6586 | 7386 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| LKPIEHCK_23 | 156 | 1121 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LKPIEHCK_23 | 156 | 1121 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| LKPIEHCK_156 | 6586 | 7386 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LKPIEHCK_5 | 10580 | 12505 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKPIEHCK_23 | 156 | 1118 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| LKPIEHCK_146 | 9358 | 9867 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LKPIEHCK_156 | 6586 | 7383 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| LKPIEHCK_5 | 10583 | 12505 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LKPIEHCK_146 | 8128 | 9330 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LKPIEHCK_67 | 868 | 1448 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKPIEHCK_1 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_2 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_3 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_4 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_5 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_6 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_7 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_8 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_9 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_10 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_11 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_12 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_13 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_14 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_15 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_16 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_17 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_18 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_19 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_20 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_21 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_22 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_23 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_24 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_25 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_26 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_27 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_28 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_29 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_30 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_31 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_32 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_33 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_34 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_35 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_36 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_37 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_38 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_39 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_40 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_42 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_43 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_44 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_45 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_46 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_47 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_48 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_49 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_50 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_51 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_52 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_53 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_54 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_55 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_56 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_57 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_58 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_59 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_60 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_61 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_62 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_63 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_64 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_65 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_66 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_67 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_68 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_69 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_70 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_71 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_72 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_73 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_74 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_75 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_76 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_77 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_78 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_79 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_80 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_81 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_82 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_83 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_84 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_85 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_86 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_87 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_88 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_89 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_90 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_91 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_92 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_93 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_94 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_95 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_96 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_97 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_98 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_99 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_100 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_101 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_102 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_103 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_104 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_105 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_106 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_107 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_108 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_109 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_110 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_111 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_112 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_113 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_114 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_115 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_116 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_117 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_118 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_119 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_120 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_121 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_122 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_123 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_124 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_125 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_126 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_127 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_128 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_129 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_130 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_131 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_132 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_133 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_134 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_135 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_136 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_137 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_138 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_139 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_140 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_141 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_142 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_143 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_144 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_145 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_146 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_147 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_148 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_149 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_150 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_151 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_152 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_153 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_154 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_155 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_156 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_157 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_158 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_159 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_160 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_161 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_162 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_163 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_164 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_165 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_166 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_167 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_168 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_169 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_170 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_171 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_172 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_173 | 0.0 | 1.0 | 0.0 |
| LKPIEHCK_174 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_175 | 1.0 | 0.0 | 1.0 |
| LKPIEHCK_176 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)