Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMKPOLHC_6 | 160845 | 162819 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| JMKPOLHC_25 | 64717 | 65682 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JMKPOLHC_25 | 64717 | 65682 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| JMKPOLHC_6 | 160845 | 162770 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMKPOLHC_25 | 64720 | 65682 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| JMKPOLHC_6 | 160848 | 162770 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JMKPOLHC_46 | 1058 | 1638 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JMKPOLHC_1 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_2 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_3 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_4 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_5 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_6 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_7 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_8 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_9 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_10 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_11 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_12 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_13 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_14 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_15 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_16 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_17 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_18 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_19 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_20 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_21 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_22 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_23 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_24 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_25 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_26 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_27 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_28 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_29 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_30 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_31 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_32 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_33 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_34 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_35 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_36 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_37 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_38 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_39 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_40 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_41 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_42 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_43 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_44 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_45 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_46 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_47 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_48 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_49 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_50 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_51 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_52 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_53 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_54 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_55 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_56 | 1.0 | 0.0 | 1.0 |
| JMKPOLHC_57 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_58 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_59 | 0.0 | 1.0 | 0.0 |
| JMKPOLHC_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JMKPOLHC_20 | 28620 | 30284 | False | Unknown | VOG4618, |
Phigaro v2.4.0 (Database: Jan. 2024 release)