Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AICFIGBH_88 | 160847 | 162821 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| AICFIGBH_28 | 122513 | 123478 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AICFIGBH_28 | 122513 | 123478 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| AICFIGBH_88 | 160847 | 162772 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AICFIGBH_28 | 122516 | 123478 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| AICFIGBH_88 | 160850 | 162772 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AICFIGBH_76 | 400 | 980 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AICFIGBH_1 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_2 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_3 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_4 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_5 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_6 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_7 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_8 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_9 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_10 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_11 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_12 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_13 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_14 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_15 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_16 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_17 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_18 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_19 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_20 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_21 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_22 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_23 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_24 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_25 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_26 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_27 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_28 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_29 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_30 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_31 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_32 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_33 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_34 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_35 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_36 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_37 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_38 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_39 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_40 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_41 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_42 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_43 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_44 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_45 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_46 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_47 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_48 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_49 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_50 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_51 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_52 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_53 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_54 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_55 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_56 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_57 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_58 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_59 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_60 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_61 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_62 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_64 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_65 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_66 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_67 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_68 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_69 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_70 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_71 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_72 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_73 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_74 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_75 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_76 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_77 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_78 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_79 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_80 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_81 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_82 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_83 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_84 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_85 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_86 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_87 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_88 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_89 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_90 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_91 | 0.0 | 1.0 | 0.0 |
| AICFIGBH_92 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_93 | 1.0 | 0.0 | 1.0 |
| AICFIGBH_94 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AICFIGBH_40 | 28621 | 30285 | False | Unknown | VOG4618, |
Phigaro v2.4.0 (Database: Jan. 2024 release)