Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIHHDPPA_196 | 20190 | 20990 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| GIHHDPPA_18 | 10646 | 12571 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GIHHDPPA_34 | 8233 | 9198 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| GIHHDPPA_66 | 8193 | 9398 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIHHDPPA_34 | 8233 | 9198 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| GIHHDPPA_196 | 20190 | 20990 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| GIHHDPPA_18 | 10646 | 12571 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIHHDPPA_34 | 8236 | 9198 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| GIHHDPPA_66 | 9423 | 9932 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GIHHDPPA_196 | 20193 | 20990 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| GIHHDPPA_18 | 10649 | 12571 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GIHHDPPA_66 | 8193 | 9395 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GIHHDPPA_89 | 1056 | 1636 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIHHDPPA_1 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_2 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_3 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_4 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_5 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_6 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_7 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_8 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_9 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_10 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_11 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_12 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_13 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_14 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_15 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_16 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_17 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_18 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_19 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_20 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_21 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_22 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_23 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_24 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_25 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_26 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_27 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_28 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_29 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_30 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_31 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_32 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_33 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_34 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_35 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_36 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_37 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_38 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_39 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_40 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_41 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_42 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_43 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_44 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_45 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_46 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_47 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_48 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_49 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_50 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_51 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_52 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_53 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_54 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_55 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_56 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_57 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_58 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_59 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_60 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_61 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_63 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_64 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_65 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_66 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_67 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_68 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_69 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_70 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_71 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_72 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_73 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_74 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_75 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_76 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_77 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_78 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_79 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_80 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_81 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_82 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_83 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_84 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_85 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_86 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_87 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_88 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_89 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_90 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_91 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_92 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_93 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_94 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_95 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_96 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_97 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_98 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_99 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_100 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_101 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_102 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_103 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_104 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_105 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_106 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_107 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_108 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_109 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_110 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_111 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_112 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_113 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_114 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_115 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_116 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_117 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_118 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_119 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_120 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_121 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_122 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_124 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_125 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_126 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_127 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_128 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_129 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_130 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_131 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_132 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_133 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_134 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_135 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_136 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_137 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_138 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_139 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_140 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_141 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_142 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_143 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_144 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_145 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_146 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_147 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_148 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_149 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_150 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_151 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_152 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_153 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_154 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_155 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_156 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_157 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_158 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_159 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_160 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_161 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_162 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_163 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_164 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_165 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_166 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_167 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_168 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_169 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_170 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_171 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_172 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_173 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_174 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_175 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_176 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_177 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_178 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_179 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_180 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_181 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_182 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_183 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_184 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_185 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_186 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_187 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_188 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_189 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_190 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_191 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_192 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_193 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_194 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_195 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_196 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_197 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_198 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_199 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_200 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_201 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_202 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_203 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_204 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_205 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_206 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_207 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_208 | 0.0 | 1.0 | 0.0 |
| GIHHDPPA_209 | 1.0 | 0.0 | 1.0 |
| GIHHDPPA_210 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)