Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFDACLCA_139 | 22231 | 23436 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LFDACLCA_197 | 18963 | 19928 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| LFDACLCA_13 | 10580 | 12505 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LFDACLCA_182 | 5183 | 5983 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LFDACLCA_197 | 18963 | 19928 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| LFDACLCA_182 | 5183 | 5983 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LFDACLCA_13 | 10580 | 12505 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFDACLCA_197 | 18966 | 19928 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| LFDACLCA_139 | 21697 | 22206 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LFDACLCA_182 | 5183 | 5980 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| LFDACLCA_13 | 10583 | 12505 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LFDACLCA_139 | 22234 | 23436 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LFDACLCA_83 | 1225 | 1805 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFDACLCA_1 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_2 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_3 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_4 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_5 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_6 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_7 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_8 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_9 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_10 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_11 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_12 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_13 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_14 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_15 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_16 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_17 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_18 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_19 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_20 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_21 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_22 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_23 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_24 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_25 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_26 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_27 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_28 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_29 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_30 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_31 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_32 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_33 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_34 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_35 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_36 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_37 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_38 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_39 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_40 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_41 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_42 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_43 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_44 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_45 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_46 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_47 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_48 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_49 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_50 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_51 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_52 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_53 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_54 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_55 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_56 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_58 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_59 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_60 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_61 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_62 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_63 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_64 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_65 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_66 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_67 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_68 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_69 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_70 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_71 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_72 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_73 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_74 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_75 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_76 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_77 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_78 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_79 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_80 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_81 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_82 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_83 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_84 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_85 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_86 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_87 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_88 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_89 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_90 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_91 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_92 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_93 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_94 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_95 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_96 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_97 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_98 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_99 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_100 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_101 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_102 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_103 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_104 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_105 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_106 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_107 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_108 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_109 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_110 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_111 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_112 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_113 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_114 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_115 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_116 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_117 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_118 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_119 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_120 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_121 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_122 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_123 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_124 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_125 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_126 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_127 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_128 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_129 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_130 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_131 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_132 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_133 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_134 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_135 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_136 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_137 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_138 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_139 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_140 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_141 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_142 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_143 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_144 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_145 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_146 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_147 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_148 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_149 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_150 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_151 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_152 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_153 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_154 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_155 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_156 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_157 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_158 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_159 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_160 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_161 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_162 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_163 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_164 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_165 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_166 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_167 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_168 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_169 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_170 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_171 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_172 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_173 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_174 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_175 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_176 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_177 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_178 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_179 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_180 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_181 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_182 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_183 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_184 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_185 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_186 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_187 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_188 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_189 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_190 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_191 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_192 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_193 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_194 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_195 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_196 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_197 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_198 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_199 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_200 | 0.0 | 1.0 | 0.0 |
| LFDACLCA_201 | 1.0 | 0.0 | 1.0 |
| LFDACLCA_202 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)