Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEGJNGJK_8 | 54211 | 55176 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| CEGJNGJK_59 | 13656 | 14471 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| CEGJNGJK_35 | 1884 | 3830 | tet(Q) | ARO:3000191 | tet(Q) | 96.39 | 98.63 | Z21523.1 |
| CEGJNGJK_15 | 1081 | 1905 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| CEGJNGJK_15 | 3 | 878 | ErmF | ARO:3000498 | ErmF | 98.50 | 109.40 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CEGJNGJK_15 | 1081 | 1905 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| CEGJNGJK_59 | 13656 | 14471 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| CEGJNGJK_8 | 54211 | 55176 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CEGJNGJK_8 | 54211 | 55176 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CEGJNGJK_8 | 54211 | 55176 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CEGJNGJK_8 | 54211 | 55176 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| CEGJNGJK_35 | 1884 | 3796 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 99.33 | L33696 |
| CEGJNGJK_15 | 78 | 878 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEGJNGJK_15 | 1084 | 1905 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| CEGJNGJK_8 | 54211 | 55173 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| CEGJNGJK_59 | 13659 | 14471 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| CEGJNGJK_35 | 1884 | 3797 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.37 | 99.53 | WP_063856407.1 |
| CEGJNGJK_15 | 78 | 875 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEGJNGJK_1 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_2 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_3 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_4 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_5 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_6 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_7 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_8 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_9 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_10 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_11 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_12 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_13 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_14 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_15 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_16 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_17 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_18 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_19 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_20 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_21 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_22 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_23 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_24 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_25 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_26 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_27 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_28 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_29 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_30 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_31 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_32 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_33 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_34 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_35 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_36 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_37 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_38 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_39 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_40 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_41 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_42 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_43 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_44 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_45 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_46 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_47 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_48 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_49 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_50 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_51 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_52 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_53 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_54 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_55 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_56 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_57 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_58 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_59 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_60 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_61 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_62 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_63 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_64 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_65 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_66 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_67 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_68 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_69 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_70 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_71 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_72 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_73 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_74 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_75 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_76 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_77 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_78 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_79 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_80 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_81 | 1.0 | 0.0 | 1.0 |
| CEGJNGJK_83 | 0.0 | 1.0 | 0.0 |
| CEGJNGJK_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)