Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 0 | 0 | 13.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMBAKNJG_11 | 120602 | 121807 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CMBAKNJG_18 | 33472 | 35397 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| CMBAKNJG_18 | 32385 | 33185 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| CMBAKNJG_42 | 6842 | 7705 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| CMBAKNJG_42 | 5415 | 6641 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| CMBAKNJG_39 | 1669 | 2463 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
| CMBAKNJG_39 | 1034 | 1576 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| CMBAKNJG_42 | 866 | 2026 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 99.48 | M37699.1 |
| CMBAKNJG_72 | 137 | 952 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| CMBAKNJG_39 | 129 | 1037 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| CMBAKNJG_56 | 101 | 2074 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMBAKNJG_39 | 129 | 1037 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| CMBAKNJG_39 | 1669 | 2463 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| CMBAKNJG_72 | 137 | 952 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| CMBAKNJG_56 | 149 | 2074 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | Z21523 |
| CMBAKNJG_42 | 866 | 2032 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| CMBAKNJG_18 | 32385 | 33185 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| CMBAKNJG_42 | 5415 | 6641 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMBAKNJG_39 | 9772 | 10635 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| CMBAKNJG_42 | 6845 | 7705 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| CMBAKNJG_39 | 129 | 1034 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| CMBAKNJG_39 | 1669 | 2460 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| CMBAKNJG_11 | 121832 | 122341 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CMBAKNJG_39 | 1034 | 1573 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| CMBAKNJG_72 | 137 | 949 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| CMBAKNJG_56 | 149 | 2071 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| CMBAKNJG_42 | 869 | 2032 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| CMBAKNJG_11 | 120602 | 121804 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CMBAKNJG_18 | 32385 | 33182 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CMBAKNJG_42 | 5415 | 6638 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
| CMBAKNJG_18 | 33472 | 35394 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMBAKNJG_1 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_2 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_3 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_4 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_5 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_6 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_7 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_8 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_9 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_10 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_11 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_12 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_13 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_14 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_15 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_16 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_17 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_18 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_19 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_20 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_21 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_22 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_23 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_24 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_25 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_26 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_27 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_28 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_29 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_30 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_31 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_32 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_33 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_34 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_35 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_36 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_37 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_38 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_39 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_40 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_41 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_42 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_43 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_44 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_45 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_46 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_47 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_49 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_50 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_51 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_52 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_53 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_54 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_55 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_56 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_57 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_58 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_59 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_60 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_61 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_62 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_63 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_64 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_65 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_66 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_67 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_68 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_69 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_70 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_71 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_72 | 1.0 | 0.0 | 1.0 |
| CMBAKNJG_73 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_74 | 0.0 | 1.0 | 0.0 |
| CMBAKNJG_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)