Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAFKJDIJ_23 | 89135 | 90100 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| PAFKJDIJ_9 | 3313 | 4047 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PAFKJDIJ_23 | 89135 | 90100 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| PAFKJDIJ_9 | 3313 | 4047 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAFKJDIJ_23 | 89138 | 90100 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| PAFKJDIJ_9 | 3316 | 4047 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PAFKJDIJ_81 | 1063 | 1643 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAFKJDIJ_1 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_2 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_3 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_4 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_5 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_6 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_7 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_8 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_9 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_10 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_11 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_12 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_13 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_14 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_15 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_16 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_17 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_18 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_19 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_20 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_21 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_22 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_23 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_24 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_25 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_26 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_27 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_28 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_29 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_30 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_31 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_32 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_33 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_34 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_35 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_36 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_37 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_38 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_39 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_40 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_41 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_42 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_43 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_44 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_45 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_46 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_47 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_48 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_49 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_50 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_51 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_52 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_53 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_54 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_55 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_56 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_57 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_58 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_59 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_60 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_61 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_62 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_63 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_64 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_65 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_66 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_67 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_68 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_69 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_70 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_71 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_72 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_73 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_74 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_76 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_77 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_78 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_79 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_80 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_81 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_82 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_84 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_85 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_86 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_88 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_89 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_90 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_91 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_92 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_93 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_94 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_95 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_96 | 1.0 | 0.0 | 1.0 |
| PAFKJDIJ_97 | 0.0 | 1.0 | 0.0 |
| PAFKJDIJ_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAFKJDIJ_2 | 114231 | 122647 | False | Unknown | VOG0572, |
| PAFKJDIJ_13 | 39210 | 46855 | False | Unknown | VOG0159, |
| PAFKJDIJ_22 | 51166 | 63036 | False | Unknown | VOG5821, |
Phigaro v2.4.0 (Database: Jan. 2024 release)