Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPIGJKAF_19 | 82915 | 83778 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HPIGJKAF_19 | 81598 | 82734 | tet(X4) | ARO:3004720 | tet(X4) | 89.95 | 98.18 | MK134376.1 |
| HPIGJKAF_19 | 80585 | 81385 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| HPIGJKAF_32 | 15400 | 17373 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| HPIGJKAF_20 | 3764 | 4498 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HPIGJKAF_19 | 80585 | 81385 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| HPIGJKAF_32 | 15448 | 17373 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| HPIGJKAF_20 | 3764 | 4498 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| HPIGJKAF_20 | 1529 | 2992 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| HPIGJKAF_20 | 189 | 1403 | mef(A) | Erythromycin, Azithromycin | 94.40 | 99.75 | AF227520 |
| HPIGJKAF_19 | 81598 | 82764 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 93.57 | 100.00 | GU014535 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPIGJKAF_19 | 82918 | 83778 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HPIGJKAF_19 | 80585 | 81382 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| HPIGJKAF_20 | 3764 | 4495 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| HPIGJKAF_32 | 15448 | 17370 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| HPIGJKAF_19 | 83957 | 84796 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| HPIGJKAF_20 | 189 | 1412 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.04 | 100.00 | WP_012102963.1 |
| HPIGJKAF_20 | 1529 | 2989 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| HPIGJKAF_19 | 81601 | 82764 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 92.27 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPIGJKAF_1 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_2 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_3 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_4 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_5 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_6 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_7 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_8 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_9 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_10 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_11 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_12 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_13 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_14 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_15 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_16 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_17 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_18 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_19 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_20 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_21 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_22 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_23 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_24 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_25 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_26 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_27 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_28 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_29 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_30 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_31 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_32 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_33 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_34 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_35 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_36 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_37 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_38 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_39 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_40 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_41 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_42 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_43 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_44 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_45 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_46 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_47 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_48 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_49 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_50 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_51 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_52 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_53 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_55 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_56 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_57 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_58 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_59 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_60 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_61 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_62 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_63 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_64 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_65 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_66 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_67 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_69 | 1.0 | 0.0 | 1.0 |
| HPIGJKAF_70 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_71 | 0.0 | 1.0 | 0.0 |
| HPIGJKAF_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPIGJKAF_5 | 120183 | 124173 | False | Unknown | VOG4567, |
Phigaro v2.4.0 (Database: Jan. 2024 release)