Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIGGGDOP_28 | 32933 | 34906 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| NIGGGDOP_19 | 3764 | 4498 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NIGGGDOP_28 | 32933 | 34858 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| NIGGGDOP_19 | 3764 | 4498 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| NIGGGDOP_19 | 1529 | 2992 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| NIGGGDOP_19 | 189 | 1403 | mef(A) | Erythromycin, Azithromycin | 94.40 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIGGGDOP_19 | 3764 | 4495 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| NIGGGDOP_28 | 32936 | 34858 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| NIGGGDOP_19 | 189 | 1412 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.04 | 100.00 | WP_012102963.1 |
| NIGGGDOP_19 | 1529 | 2989 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIGGGDOP_1 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_2 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_3 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_4 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_5 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_6 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_7 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_8 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_9 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_10 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_11 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_12 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_13 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_14 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_15 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_16 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_17 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_18 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_19 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_20 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_21 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_22 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_23 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_24 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_25 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_26 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_27 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_28 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_29 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_30 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_31 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_32 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_33 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_34 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_35 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_36 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_37 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_38 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_39 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_40 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_41 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_42 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_43 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_44 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_45 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_46 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_47 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_48 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_50 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_51 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_52 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_53 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_54 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_55 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_56 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_57 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_58 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_59 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_60 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_61 | 1.0 | 0.0 | 1.0 |
| NIGGGDOP_62 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_63 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_64 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_65 | 0.0 | 1.0 | 0.0 |
| NIGGGDOP_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIGGGDOP_11 | 120183 | 124173 | False | Unknown | VOG4567, |
Phigaro v2.4.0 (Database: Jan. 2024 release)