Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFLFDA_85 | 50778 | 51743 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| COCFLFDA_1 | 10249 | 12174 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| COCFLFDA_57 | 9858 | 10592 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| COCFLFDA_12 | 5558 | 7531 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COCFLFDA_85 | 50778 | 51743 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| COCFLFDA_12 | 5558 | 7483 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| COCFLFDA_57 | 9858 | 10592 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| COCFLFDA_57 | 7623 | 9086 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| COCFLFDA_57 | 6283 | 7497 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFLFDA_85 | 50781 | 51743 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| COCFLFDA_57 | 9858 | 10589 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| COCFLFDA_12 | 5561 | 7483 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| COCFLFDA_57 | 7623 | 9083 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| COCFLFDA_57 | 6283 | 7506 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| COCFLFDA_1 | 10252 | 12174 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| COCFLFDA_30 | 542 | 1122 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COCFLFDA_1 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_2 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_3 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_4 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_5 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_6 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_7 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_8 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_9 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_10 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_11 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_12 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_13 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_14 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_15 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_17 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_18 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_19 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_20 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_21 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_22 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_23 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_24 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_25 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_26 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_27 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_28 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_29 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_30 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_31 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_32 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_33 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_35 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_36 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_37 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_38 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_40 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_41 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_42 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_43 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_44 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_45 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_46 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_47 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_48 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_49 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_50 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_51 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_52 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_53 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_54 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_55 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_56 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_57 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_58 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_59 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_60 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_61 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_62 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_63 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_64 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_65 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_66 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_67 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_68 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_69 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_70 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_71 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_72 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_73 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_74 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_75 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_76 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_77 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_78 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_79 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_80 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_81 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_82 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_83 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_84 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_85 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_86 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_87 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_88 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_89 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_90 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_91 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_92 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_93 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_94 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_95 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_96 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_97 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_98 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_99 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_100 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_101 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_102 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_103 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_104 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_105 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_106 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_107 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_108 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_109 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_110 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_111 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_112 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_113 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_114 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_115 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_116 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_117 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_118 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_119 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_120 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_121 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_122 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_123 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_124 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_125 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_126 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_127 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_128 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_129 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_130 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_131 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_132 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_133 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_134 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_135 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_136 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_137 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_138 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_139 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_140 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_141 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_142 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_143 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_144 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_145 | 1.0 | 0.0 | 1.0 |
| COCFLFDA_146 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_147 | 0.0 | 1.0 | 0.0 |
| COCFLFDA_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COCFLFDA_44 | 38048 | 46464 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)